PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc004198.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 156aa    MW: 17547.4 Da    PI: 7.6518
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc004198.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.5e-201364256
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                             +y+G+r+++ +g+++AeIrdp+ ng  +r +lg+f+taeeAa+a+++a+ +++g+
  Itr_sc004198.1_g00001.1 13 KYRGIRRRP-WGKYAAEIRDPNRNG--ARLWLGTFDTAEEAARAYDRAAYAFRGH 64
                             8********.**********96665..*************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.1E-341377IPR001471AP2/ERF domain
PROSITE profilePS5103225.2381371IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-321372IPR001471AP2/ERF domain
SuperFamilySSF541715.23E-241372IPR016177DNA-binding domain
PfamPF008472.9E-141364IPR001471AP2/ERF domain
CDDcd000181.23E-181373No hitNo description
PRINTSPR003671.1E-111425IPR001471AP2/ERF domain
PRINTSPR003671.1E-113753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MENEERVIRR ENKYRGIRRR PWGKYAAEIR DPNRNGARLW LGTFDTAEEA ARAYDRAAYA  60
FRGHQAILNF PNDGHYAGGN VVAAAAAPGP SSSTPPPPPP PSTSSVYVPS FSVSREDYYE  120
RVGDTSEDKI IEFEYLDNNL LEDLLGSQVN KRSKLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A1e-261471663ATERF1
2gcc_A1e-261471663ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009610278.11e-56PREDICTED: ethylene-responsive transcription factor ERF098-like
RefseqXP_016485379.11e-56PREDICTED: ethylene-responsive transcription factor ERF098-like
RefseqXP_016567929.18e-57PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC54e-38ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLM1ANK39e-47M1ANK3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000266783e-46(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-23ERF family protein